The Primary Information of Calcium-activated Potassium Channel

1. Summary

Calcium-activated potassium channels are potassium channels gated by calcium.[1]. This family of ion channels is, for the most part, activated by intracellular Ca2+ and contains 8 members (KCa1.1, KCa2.1, KCa2.2, KCa2.3, KCa3.1, KCa4.1, KCa4.2, KCa5.1) in the human genome.

Knowing the structure of these channels can provide insight into their function and mechanism of gating. They are made up of two different subunits, alpha and beta. The alpha subunit is a tetramer which forms the pore, the voltage sensor, and the calcium sensing region. This subunit of the channel is made up of seven trans-membrane units, and a large intracellular region. The voltage sensor is made by the S4 transmembrane region, which has several Arginine residues which act to 'sense' the changes in charge and move in a very similar way to other voltage gated potassium channels. As they move in response to the voltage changes they open and close the gate. The linker between the S5 and S6 region serves to form the pore of the channel. Inside of the cell, the main portion to note is the calcium bowl. This bowl is thought to be the site of calcium binding [2].

2. Binding Sites

Inhibitor

Yellow Sphere was 17β-Estradiol binding site (residues W163, and F166) in the voltage- and Ca2+-activated K+ (BK) channel β1 subunit.[3].

Blocker

Radioligand binding experiments showed that this common His residue (H337N) located in the S5-PHelix loop was crucial to the inhibitory interaction of apamin with the channel [8]. Paxilline blocked maxi-K channels at a site distinct from the ChTX binding site located near the external entrance to the pore [11].

Activator

IKCa1 identified Thr250 in the P-region and Val275 in S6 (red sphere) as being critical for TRAM binding [4]. White Sphere was magnesium activation of calcium-activated potassium channel binding site (residues E374, E399 and Q397).[5]. Blue Sphere was Bisphenol A activates BK channels through effects on α and β1 subunits binding site (residues T169, L172, and L173) [6]. The PHU-binding pocket includes A477, L480 and V481 of CaMBD, and F19, I27, L32, M51, I52, V55, I63, F68 and M71 of CaM was binding for 1-EBIO and NS309 [7]. BK activation by Cym04 occurs in a splice variant-specific manner; it does not occur in such Slo1 BK channels using an alternative neuronal exon 9, which codes for the linker connecting the transmembrane segment S6 and the cytosolic RCK1 domain—the S6/RCK linker [10].

Allosteric

Apamin does not behave as a classical pore blocker but blocks using an allosteric mechanism for KCa2 channel [9].

3. Target List

ICDB_Pro ID Protein Name Organism Uniport ID Gene name
ICDB_Pro_0688Small conductance calcium-activated potassium channel protein 2Rattus norvegicus (Rat)P70604Kcnn2
ICDB_Pro_1507Small conductance calcium-activated potassium channel protein 2Homo sapiens (Human)Q9H2S1KCNN2
ICDB_Pro_0642Small conductance calcium-activated potassium channel protein 3Mus musculus (Mouse)P58391Kcnn3;Sk3
ICDB_Pro_0643Small conductance calcium-activated potassium channel protein 3Sus scrofa (Pig)P58392KCNN3
ICDB_Pro_0689Small conductance calcium-activated potassium channel protein 3Rattus norvegicus (Rat)P70605Kcnn3
ICDB_Pro_1661Small conductance calcium-activated potassium channel protein 3Homo sapiens (Human)Q9UGI6KCNN3;K3
ICDB_Pro_0814Small conductance calcium-activated potassium channel-like protein 3Caenorhabditis elegansQ11122kcnl-3;C03F11.1
ICDB_Pro_0218β1 (Calcium-activated potassium channel subunit beta-1)Oryctolagus cuniculus (Rabbit)O46372KCNMB1
ICDB_Pro_0720β1 (Calcium-activated potassium channel subunit beta-1)Rattus norvegicus (Rat)P97678Kcnmb1
ICDB_Pro_0850β1 (Calcium-activated potassium channel subunit beta-1)Homo sapiens (Human)Q16558KCNMB1